#homologous-recombination

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#genetics
Data science
fromMedium
2 days ago

In-Silico Perturbation Meets Single-Cell Foundation Models: From Zero-Shot Potential to Fine-Tuned...

In-silico perturbation simulates cellular state changes, but biological trustworthiness remains a challenge despite advancements in single-cell foundation models.
fromNature
4 days ago

DNA damage burden causes selective CUX2 neuron loss in neuroinflammation - Nature

DNA damage can originate from internal sources like metabolic by-products or normal cellular activities, as well as external factors such as cosmic radiation, diet, and pollution.
Medicine
fromNature
4 days ago

The 1000 Chinese Pangenome empowers medical and population genetics - Nature

Recent advancements in long-read sequencing technology and assembly algorithms have enabled the generation of high-quality diploid genome assemblies, which provide a more comprehensive view of complex variants and enhance our understanding of their formation mechanisms and functional consequences.
Science
SF parents
fromHigh Country News
5 days ago

A DNA archive critical to identifying missing migrants has itself gone missing - High Country News

Colibrí Center's missing-persons database has become inaccessible, leaving families without hope for identifying missing migrants.
#crispr
#cloning
fromFuturism
1 week ago
OMG science

Scientists Cloned a Mouse, Then Cloned the Clone, Et Cetera. The Results Were Horrific

fromFuturism
4 days ago
Science

A Startup Has Been Quietly Pitching Cloned Human Bodies to Transfer Your Brain Into

fromNature
1 week ago
OMG science

Can a mouse be cloned indefinitely? Decades-long experiment has answers

OMG science
fromFuturism
1 week ago

Scientists Cloned a Mouse, Then Cloned the Clone, Et Cetera. The Results Were Horrific

Cloning mice for 58 generations led to immediate death of offspring, revealing limits to mammalian cloning.
Science
fromFuturism
4 days ago

A Startup Has Been Quietly Pitching Cloned Human Bodies to Transfer Your Brain Into

Cloning efforts have evolved from animals to controversial human embryo models, with ambitions for brainless human clones for organ transplants.
OMG science
fromNature
1 week ago

Can a mouse be cloned indefinitely? Decades-long experiment has answers

Asexual reproduction in mice is unsustainable due to accumulating mutations, limiting the potential for successful cloning.
fromNature
2 weeks ago

In vivo site-specific engineering to reprogram T cells - Nature

Using CRISPR-Cas9 and adeno-associated virus (AAV)-mediated homology-directed repair, we targeted CAR integration into the endogenous human TCR alpha locus (TRAC). TRAC-CAR T cells display dynamic CAR expression that delays exhaustion and improves tumour control in xenograft and immunocompetent models. This work has been critical for the development of allogeneic CAR T cell therapy, as it disrupts the TCR after transgene insertion—a necessary step to limit graft-versus-host disease.
Cancer
Artificial intelligence
fromFortune
2 weeks ago

Could data from 100 million species help cure disease? One startup is betting on it | Fortune

Basecamp Research launches the Trillion Gene Atlas to map genetic diversity across 100 million species, aiming to expand biological knowledge 100-fold through AI-powered genomic data collection.
Science
fromNature
1 week ago

Zombieland: Genome transplant brings 'dead' bacteria back to life

Researchers have revived 'dead' bacterial cells by replacing their DNA with a working genome from another species, advancing genome engineering.
Science
fromNature
2 weeks ago

Synthetic circuits for cell ratio control - Nature

Synthetic biology enables artificial cell differentiation and division of labor by engineering genetic and epigenetic circuits that mimic natural stem cell asymmetric division processes.
fromwww.theguardian.com
3 weeks ago

Can scientists really resurrect the dodo? Inside the company that says they can

Colossal Biosciences, valued at $10.2bn after raising hundreds of millions of dollars in funding from investors including celebrities spanning from Tiger Woods to Paris Hilton, has provoked a stampede of acclaim as well as denunciation after announcing last year it had made the dire wolf, a species lost from the world for more than 10,000 years, de-extinct via the birth of three new pups.
OMG science
Science
fromwww.nature.com
2 weeks ago

Molecular basis of oocyte cytoplasmic lattice assembly

Cryo-EM reveals the cytoplasmic lattice in mammalian oocytes comprises repeating U-shaped basket and adapter ring units with 14 protein subunits, essential for oocyte maturation and embryonic development.
fromwww.nature.com
1 month ago

BCDX2CX3 and DX2CX3 complexes assemble and stabilize RAD51 filaments

Central to HR is the RAD51 recombinase, whose assembly into a nucleoprotein filament is governed by five RAD51 paralogs (RAD51B, RAD51C, RAD51D, XRCC2, XRCC3). Mutations in any of these proteins predispose individuals to multiple cancers or genetic disorders. These paralogs are thought to form two functionally separate complexes, BCDX2 and CX3, that act independently at different stages of HR.
Left-wing politics
fromTruthout
1 month ago

Reproductive Tech That Promises Smart Babies Is Peddling Soft Eugenics

Reproductive tech companies now offer embryo genetic screening for intelligence and disease, raising concerns about eugenics, disability discrimination, and wealth-based genetic enhancement.
Cancer
fromFuturism
1 month ago

Bacteria Engineered to Eat Tumors From the Inside

Researchers engineered Clostridium sporogenes bacteria to consume tumor cells from inside, offering a potential alternative to traditional cancer treatments.
Science
fromNature
3 weeks ago

From cancer to Alzheimer's: could a renewed focus on energy transform biomedicine?

Energy flow, governed by universal physics principles, provides a more fundamental understanding of biological processes and disease than molecular mechanisms alone.
OMG science
fromNature
1 month ago

Why 'quantum proteins' could be the next big thing in biology

Fluorescent proteins from crystal jellyfish are being transformed into quantum bits to create highly sensitive quantum sensors for biological applications.
Medicine
fromenglish.elpais.com
1 month ago

The very long road from a cancer cure' in mice to one in humans

Promising mouse cancer cures often fail to become safe, effective human drugs; premature media claims can create false patient expectations and hinder responsible research progress.
Science
fromNature
1 month ago

Daily briefing: How DNA testing can tell identical twins apart

Advanced forensic techniques including whole-genome sequencing and epigenetic analysis can differentiate between identical twins in criminal investigations, while GLP-1 drugs show potential in reducing addiction across multiple substances, and researchers have successfully synthesized hexagonal diamond.
Science
fromArs Technica
1 month ago

Large genome model: Open source AI trained on trillions of bases

Evo 2, an AI system trained on trillions of base pairs from all life domains, can identify genes, regulatory sequences, and splice sites in complex genomes including humans.
fromwww.nature.com
1 month ago

Genetically encoded assembly recorder temporally resolves cellular history

GEMINI leverages a computationally designed protein assembly as an intracellular memory device to record the history of individual cells. GEMINI grows predictably within live cells, capturing cellular events as tree-ring-like fluorescent patterns for imaging-based retrospective readout. Absolute chronological information of activity histories is attainable with hour-level accuracy.
Philosophy
fromAeon
2 months ago

Groundbreaking visuals capture how our bodies repair damaged DNA | Aeon Videos

Drew Berry creates striking biomedical animations that visualize microscopic biological processes like DNA repair, revealing intricate evolution-shaped cellular mechanisms.
Medicine
fromwww.nature.com
1 month ago

Pre-incision structures reveal principles of DNA nucleotide excision repair

Nucleotide excision repair removes bulky DNA lesions via coordinated recognition, verification, excision, and resynthesis to maintain genome stability and prevent cancer and premature ageing.
Science
fromInsideHook
1 month ago

Scientists Question the Conventional Y Chromosome Wisdom

Researchers discovered evidence that certain genetic elements can skew sex ratios toward male offspring beyond the expected 50/50 split, with one family showing a 2:1 male-to-female ratio across generations.
fromNews Center
1 month ago

AI Model May Improve RNA Sequencing Research - News Center

Scientists in the laboratory of Rendong Yang, PhD, associate professor of Urology, have developed a new large language model that can interpret transcriptomic data in cancer cell lines more accurately than conventional approaches, as detailed in a recent study published in Nature Communications. Long-read RNA sequencing technologies have transformed transcriptomics research by detecting complex RNA splicing and gene fusion events that have often been missed by conventional short-read RNA-sequencing methods.
Cancer
fromNature
1 month ago

AI tools can design genomes. Will they upend how life evolves?

Biology is undergoing a transformation. After centuries of studying life as it evolves naturally, researchers are now using a combination of computation and genome engineering to intervene, generating new proteins and even whole bacteria from scratch. The use of artificial-intelligence tools to design biological components, an approach known as generative biology, is set to turbocharge this area of research. Just last year, scientists used AI-assisted design to produce artificial genes that can be expressed in mammalian cells.
Science
Science
fromNature
1 month ago

A membrane-bound nuclease directly cleaves phage DNA during genome injection - Nature

SNIPE is a membrane-bound nuclease defense system in bacteria that directly targets foreign nucleic acids to prevent phage infection through a novel mechanism distinct from established defense pathways.
Medicine
fromThe Atlantic
1 month ago

Their Mutated Genes Were Supposed to Be Harmless

People who carry single-gene mutations for disorders like thalassemia can experience real health effects, including lethargy and fainting, despite being labeled asymptomatic.
Medicine
fromThe Washington Post
1 month ago

David Liu unlocks the power of gene editing to treat rare genetic diseases

Base and prime gene-editing technologies can precisely correct genetic mutations, enabling personalized therapies that can cure life-threatening inherited diseases.
fromArs Technica
1 month ago

Have we leapt into commercial genetic testing without understanding it?

Martschenko's argument is largely that genetic research and data have almost always been used thus far as a justification to further entrench extant social inequalities. But we know the solutions to many of the injustices in our world-trying to lift people out of poverty, for example-and we certainly don't need more genetic research to implement them. Trejo's point is largely that more information is generally better than less.
Science
Science
fromNature
2 months ago

Construction of complex and diverse DNA sequences using DNA three-way junctions - Nature

DNA writing remains limited by short oligo synthesis and two-way junction assembly methods, hindering affordable, scalable construction of large, complex synthetic DNA.
Science
fromwww.nature.com
2 months ago

Scalable and multiplexed recorders of gene regulation dynamics across weeks

CytoTape enables multiplexed, genetically encoded, spatiotemporally scalable recording of gene regulation dynamics in single cells for up to three weeks with minute-scale resolution.
Science
fromwww.nature.com
2 months ago

Author Correction: Structural insights into BCDX2 complex function in homologous recombination

Figure kymographs and several Source Data columns were duplicated during preparation; the figures and Source Data have been corrected and relabelled, with main conclusions unchanged.
Science
fromNature
2 months ago

RNA-triggered Cas12a3 cleaves tRNA tails to execute bacterial immunity - Nature

Some immune systems inactivate tRNAs to impair viral protein synthesis, and certain Cas nucleases, like LshCas13a, can cleave tRNA anticodon loops.
Science
fromWIRED
2 months ago

He Went to Prison for Gene-Editing Babies. Now He's Planning to Do It Again

He Jiankui created the first gene-edited babies, was jailed and banned, and now seeks to resume controversial genetic research despite widespread germline-editing prohibitions.
Science
fromMail Online
2 months ago

Scientists use AI to create a virus never seen before

Scientists used AI and gene-assembly tools to create Evo-Φ2147, a novel 11-gene virus designed to kill pathogenic E. coli.
Science
fromNews Center
2 months ago

Understanding the Link Between Nucleotide Metabolism and Chromatin Assembly - News Center

PRPS enzymes coordinate nucleotide synthesis and early histone maturation, synchronizing DNA replication and chromatin assembly through dual metabolic and regulatory roles.
fromNature
2 months ago

Daily briefing: The human cells in our bodies that aren't genetically ours

A virus that sickens marine mammals has been detected in Arctic waters for the first time. Scientists used drones armed with petri dishes to collect samples of blow - the air and mucus whales expel from their blowholes - from whales in northern Norway. The team identified cetacean morbillivirus in samples from humpback whales ( Megaptera novaeangliae) and one sperm whale ( Physeter macrocephalus), though the humpbacks showed no symptoms of disease.
Science
Science
fromNature
2 months ago

A 'time capsule for cells' stores the secret experiences of their past

Engineered TimeVaults capture and store cellular mRNA to continuously record past transcriptional activity, enabling retrospective study of cellular history and responses.
Science
fromNature
2 months ago

Developmental convergence and divergence in human stem cell models of autism - Nature

Distinct rare mutations and common genetic variation jointly shape ASD risk, yet convergent molecular pathology and early fetal neurodevelopmental mechanisms can be studied using stem-cell models.
Science
fromNature
2 months ago

'Remote controlled' proteins illuminate living cells

Engineered magnetically sensitive fluorescent proteins enable remote modulation of brightness in cells and animals, offering quantum-based control for biosensors and potential therapies.
Science
fromSilicon Canals
1 month ago

This gene mutation on chromosome 11 is why cilantro tastes like dish soap to millions of people - Silicon Canals

Genetic variation in the OR6A2 receptor causes cilantro to taste like soap to some people by detecting aldehyde compounds present in the herb.
Science
fromwww.scientificamerican.com
2 months ago

Google DeepMind unleashes new AI to investigate DNA's dark matter'

AlphaGenome predicts functional effects of mutations in long noncoding DNA sequences up to one million base pairs, helping interpret genomic variants for disease research.
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